Monday, December 22, 2008

Dr. Jane Lubchenco Biography

Dr. Jane Lubchenco

"Clean beaches, healthy seafood, abundant wildlife, and vibrant coastal communities all depend on maintaining diverse and resilient ocean ecosystems."
JANE LUBCHENCO
Dr. Jane Lubchenco (born December 4, 1947) Denver, Colorado. President-elect Barack Obama selected Lubchenco to head the National Oceanic and Atmospheric Administration, where she would become the first woman to hold that position if confirmed by the Senate. NOAA is part of the Department of Commerce and has a budget of roughly $4 billion.

NOAA's many divisions include the National Ocean Service, National Weather Service and National Marine Fisheries Service.
Dr. Lubchenco was the Wayne and Gladys Valley Professor of Marine Biology Distinguished Professor of Zoology, Oregon State University

Jane is an environmental scientist and marine ecologist and biologist. She graduated from Colorado College, received her Ph.D. from Harvard University in marine ecology, taught at Harvard for two years, and has been on the faculty at Oregon State University since 1978.

Her expertise includes interactions between humans and the environment: biodiversity, climate change, sustainability science, ecosystem services, marine reserves, coastal marine ecosystems, the state of the oceans and of the planet.


She lead an interdisciplinary team of scientists who study the marine ecosystem off the west coast of the U.S. This PISCO team is learning how the ecosystem works, how it is changing and how humans can modify their actions to ensure continued benefit from ocean ecosystems.

She helped lead a panel created by Gov. Ted Kulongoski to develop an Oregon strategy on climate change.

She is Past-President of the International Council for Science and a former President of the American Association for the Advancement of Science (AAAS) and the Ecological Society of America. She was a Presidential appointee to two terms on the National Science Board which advises the President and Congress and oversees the National Science Foundation. She has often testifies before Congress, addresses the United Nations, or provided scientific advice to the White House, federal and international agencies, non-governmental organizations, religious leaders and leaders of business and industry. She co-chaired Oregon Governor Kulongoski's Advisory Group on Global Warming that recommended actions the state should take to reduce its greenhouse gas emissions.

Jane founded the Aldo Leopold Leadership Program that teaches outstanding academic environmental scientists to be effective leaders and communicators of scientific information to the public, policy makers, the media and the private sector. She currently serves as Chair of the Advisory Board.

She participated actively in the Millennium Ecosystem Assessment (MA), a 5-year, international scientific assessment of the consequences of environmental changes to human well-being. Among other things, she co-chaired the MA's Synthesis for Business and Industry.

Jane is a Founding Principal of COMPASS, the Communication Partnership for Science and the Sea, a collaboration among academic scientists, communication and media specialists that communicates academic marine conservation science to policy makers, the media, managers and the public.

8 of her publications are "Science Citation Classics"; she is one of the "most highly cited" ecologists in the world (top 0.5%). She is an elected member of the National Academy of Sciences, the American Academy of Arts and Sciences, the American Philosophical Society, the Royal Society, and the Academy of Sciences for the Developing World.

She served on the Pew Oceans Commission and now the Joint Oceans Commission Initiative (a merger of the Pew Oceans Commission and the U.S. Commission on Ocean Policy). She is a Director or Trustee of the Monterey Bay Aquarium, SeaWeb and Environmental Defense; Trustee Emerita of the David and Lucile Packard Foundation and a former Trustee of the Royal Swedish Academy of Sciences' Beijer International Institute for Ecological Economics and the World Resources Institute.

Jane has received numerous awards including a MacArthur ("genius") Fellowship, a Pew Fellowship, eight honorary degrees (including one from Princeton University), the 2002 Heinz Award in the Environment, the 2003 Nierenberg Prize for Science in the Public Interest, the 2004 Environmental Law Institute Award (the first scientist to receive this honor) and the 2005 American Association for the Advancement of Science's Award for Public Understanding of Science and Technology.

Dr. Lubchenco received the Heinz Award for the Environment for her role in broadening awareness of the importance of biological sustainability to the future of humanity, her efforts to raise the visibility of ocean issues, her commitment to opening the lines of communication between scientists and citizens, and her pioneering concept of the social contract that exists between science and society.

Her Education includes a Bachelor's in biology, Colorado College, 1969; master's in zoology, University of Washington, 1971; doctorate in ecology, Harvard University, 1975

Jane is married to Bruce Menge, a marine ecologist; and has two two sons.

SOURCES: Image Licensing: This work is licensed under the Creative Commons Attribution 3.0 License. Author Obama-Biden Transition project

Sunday, December 21, 2008

Light-speed computer connection will slash genetic data transfer time between TGen-ASU

Edward Suh, Sc.D.

Edward Suh, Sc.D. Senior Investigator & Director Computational Biology Division Chief Information Officer TGen
High-speed link will position collaborators as leaders in biomedical data analysis

PHOENIX, Ariz. – Nov. 12, 2008 –– Hot on the heels of a new supercomputer, plans for a new light-speed data line between the Translational Genomics Research Institute and Arizona State University could slash the time is takes to transfer genetic information.

Accelerating the flow of information could help speed discoveries that eventually could help produce treatments and cures for diseases such as Alzheimer's, autism, diabetes and various cancers.
Because of the huge amounts of data generated by TGen's experiments, it now take as long as 12 days using conventional cables to transmit 7 terabytes of information from a typical experiment 10 miles between TGen's downtown Phoenix labs and ASU's new Saguaro 2 supercomputer in Tempe.

But through a partnership between ASU and Obsidian Strategics Inc., an Edmonton, Alberta-based defense-intelligence contractor, the same voluminous data – the equivalent of 3.5 million iPod songs – soon could be transmitted in as short as 1 hour.

The difference is something called "dark fiber,'' unused fiber optic cables installed years ago throughout the nation in anticipation of future growth and development.

"The primary advantage of a link like this is it will allow us to move data faster from the instruments at TGen to the computation and storage at ASU,'' said Dan Stanzione, director of the High Performance Computing Initiative at ASU's Ira A. Fulton School of Engineering.

"This particularly applies to the next-gen sequencers,'' said Stanzione, referring to TGen's deployment of ever-faster tools for analyzing DNA in its quest to discover the causes, treatments and possible cures of various diseases.

Dr. Edward Suh, TGen's Chief Information Officer, said such capabilities will help expedite the translation of biomedical research from TGen labs into clinical drug treatments.

"The proposed high-speed data communication link, using Obsidian's network, will significantly reduce the time it takes to run complex data analyses and systems simulations on TGen's supercomputer systems,'' Suh said.

James Lowey, TGen's Director of High-Performance Biocomputing, said, "The high-speed link between TGen and ASU will enable TGen scientists to transfer data between their labs and the computational resources at ASU at an unprecedented rate, accelerating the pace of discovery.

"With the ever-increasing amount of data being generated by both proteomics and next-generation sequencing, it is critical to have state-of-the-art communications networks between locations where data is generated, and where it is analyzed,'' Lowey said. "Having this very high-speed link helps position TGen as being a leader in biomedical data analysis.''

Stanzione said ASU still is looking for a partner to provide the fiber optic cable, but that a planned pilot dark-fiber link would be between ASU and TGen.

A single experimental run from DNA sequencers can generate 7 terabytes, or 7,000 gigabytes, of data, Stanzione said. Existing ASU-TGen connections can move about 30 gigabytes an hour, he said, meaning the transfer of scientific experimental information can take more than a week.

The proposed system using Obsidian Strategics technology is expected to hit 8,000 gigabytes per hour, or about 8 terabytes, reducing the time it takes to move data between TGen scientific instruments and the ASU supercomputer to as little as 1 hour, Stanzione said.

Reducing transmission time will be come more critical in the future, with TGen's next generation sequencers easily producing as much as 30 terabytes of data, or the equivalent of an iPod with 15 million songs.

Obsidian Strategics is the leading developer of InfiniBand range extension, routing and encryption technology. ASU and Obsidian will join with others in a venture supported by the Canadian Consulate-Phoenix to advance the capabilities of the optical network, linking higher education facilities in Arizona, as well as in adjacent states.

Obsidian's Longbow technology leverages existing optical networks, and originally was designed to meet the demands of the U.S. Department of Defense's next generation large data communications architecture.

Saguaro 2, the TGen-ASU supercomputer dedicated Oct. 3 at ASU's Barry M. Goldwater Center for Science and Engineering, is capable of 50 trillion mathematical operations per second. ###

About TGen

The Translational Genomics Research Institute (TGen) is a non-profit organization dedicated to conducting groundbreaking research with life changing results. Research at TGen is focused on helping patients with diseases such as cancer, neurological disorders and diabetes. TGen is on the cutting edge of translational research where investigators are able to unravel the genetic components of common and complex diseases. Working with collaborators in the scientific and medical communities, TGen believes it can make a substantial contribution to the efficiency and effectiveness of the translational process.

About the Ira A. Fulton School of Engineering at Arizona State University

The Ira A. Fulton School of Engineering at Arizona State University serves more than 4,000 undergraduates and 2,000 graduate students, providing skills and knowledge for science and technology-oriented careers. Ranked nationally in the top 50 among more than 185 engineering schools rated by US News & World Report magazine, the school engages in use-inspired research in a multidisciplinary setting for the benefit of individuals, society and the environment.

Its 200-plus faculty members pursue research in electrical, chemical, mechanical, aerospace, civil and environmental engineering, bioengineering, computer science, and biomedical informatics. The Ira A. School of Engineering also includes the School of Computing and Informatics, the Del E. Web School of Construction and the School of Materials. Many faculty members work collaboratively with ASU's Biodesign Institute, the School of Earth and Space Exploration and the Global Institute of Sustainability. For more information, visit the web site www.fulton.asu.edu/fulton.

Media Contacts

Steve Yozwiak Senior Science Writer Translational Genomics Research Institute Phone: (602) 343-8704 syozwiak@tgen.org

Joe Kullman Ira A. Fulton School of Engineering Arizona State University Phone: (480) 965-8122 joe.kullman@asu.edu